v1.1 03.04.09 Phosphorylation prediction results for Colorado tick fever virus

                                                                                                                  Total     Max
   Rank                                                                                                           Score     Score
  53/2881) gi|22960713|ref|NP_690897.1| VP7 [Colorado tick fever virus]                                          280.977   38.259
 113/2881) gi|22960719|ref|NP_690900.1| VP12 [Colorado tick fever virus]                                          81.874   31.516
 167/2881) gi|22960703|ref|NP_690892.1| VP2 [Colorado tick fever virus]                                          262.517   29.487
 585/2881) gi|22960701|ref|NP_690891.1| putative RNA-dependent RNA polymerase VP1 [Colorado tick fever virus]    168.188   21.304
1354/2881) gi|22960711|ref|NP_690896.1| VP6 [Colorado tick fever virus]                                           62.031   15.575
1804/2881) gi|22960707|ref|NP_690894.1| VP4 [Colorado tick fever virus]                                           20.602   13.414
2065/2881) gi|22960699|ref|NP_690889.1| VP9' [Colorado tick fever virus]                                          26.807   11.821
2247/2881) gi|22960709|ref|NP_690895.1| VP5 [Colorado tick fever virus]                                           27.957    9.722
2269/2881) gi|22960715|ref|NP_690898.1| VP8 [Colorado tick fever virus]                                            9.525    9.525
2610/2881) gi|22960705|ref|NP_690893.1| VP3 [Colorado tick fever virus]                                            8.051    6.939
2770/2881) gi|22960721|ref|NP_690901.1| VP11 [Colorado tick fever virus]                                           3.615    3.615


53/2881) score = 280.977 38.259 (total and max score)
>gi|22960713|ref|NP_690897.1| VP7 [Colorado tick fever virus]
    1 MAARLPIDAFGMSVIQQNGLKVYTILPTSNLSNLSDQISQNKLYAVSERHVRELDQRDKGKVKKIKFIVTSKSVDYENWFGPDTDTEIIQYLEEGGLYHA
                                                                                  ENWFGPDTDTEIIQY  3.031 (84)
  101 LYNACKEQKSTPSFVASPSNPAPVSLKQKEILSNWKLGTIVEFCQAVGLNRTPEEPWRQLARSYGLIFISEVGALASTHVASLDADLAKFEQREQRWMKM
           KEQKSTPSFVASPSN 14.671 (113)
         ACKEQKSTPSFVASP  7.198 (111)
  201 VDYKESFAHLGTDFNRYAFCPLIPPPCPEDSEEAILIHGSWVRSEEHDGGLFVLFKRVTIMDRHQVMGARAPSEDEEESSDPTEGSMDEVTHQTETLSLD
                                                                              SEDEEESSDPTEGSM 20.555 (280)
                                                                       VMGARAPSEDEEESS 20.301 (273)
                                                                             PSEDEEESSDPTEGS 14.172 (279)
                                                                       VMGARAPSEDEEESS  9.437 (273)
                                                                       VMGARAPSEDEEESS  4.888 (273)
                                                                       VMGARAPSEDEEESS  4.620 (273)
                                                                                    SSDPTEGSMDEVTHQ  4.128 (286)
  301 SIPPPDFSRAPVIVTGMTSAKASTSYSRDEPPEDEGNRASARPKSSPCDTCTDDSSLLQSLLSTDWVTSVSTPLHGPTLPIDAAKDLSVASESEDEVSMS
                     GMTSAKASTSYSRDE 17.037 (323)                                                 SEDEVSMSQSDAPPE 38.259 (400)
                         AKASTSYSRDEPPED  6.274 (327)                                      DLSVASESEDEVSMS 17.198 (393)
                                                                                         AKDLSVASESEDEVS 16.327 (391)
                                                                                                SESEDEVSMSQSDAP 14.393 (398)
                                                                                      IDAAKDLSVASESED 13.824 (388)
                                                                                                  SEDEVSMSQSDAPPE 13.450 (400)
                                                                                         AKDLSVASESEDEVS  4.327 (391)
  401 QSDAPPETAMDVSANHKPNTDSAHCAPSPLPQRARKIRPTEARRRAEREKRKLKPYYRSMEECFVPACDIESYRTSVIVQPLPQNVLPFPGTQLTRETVL
      
  501 RKALVRECERVAPSQAPDPEELLDSDTVKICEGRAKVMYESIPSHLRGVEIESVAPESNEVSVIYPRPQISMPDNFSLGNEEERIRTYVRKRTIMERESG
            ECERVAPSQAPDPEE 15.099 (514)                                                            MERESGGYAMLRPGY 14.577 (602)
                                                                                                    MERESGGYAMLRPGY  7.210 (602)
  601 GYAMLRPGYGAEALEHARYVSAAGVPIPELRGQVLRSRASREMMSQTDLRLLELMMPVVNVPPEGVDKDLLAVYKATVMDILTG
      


113/2881) score = 81.874 31.516 (total and max score)
>gi|22960719|ref|NP_690900.1| VP12 [Colorado tick fever virus]
    1 MPCNRAVFGAFVLALLISLQSVYFKLYEFYKNNETARNTSVAGFLKRHEVAVNVIVEFSFDILFFLCGLLGFELSPTARRLIFRRTASAEKADTVELEHV
      
  101 SSRRRNDSRDDSTVRNVSKTSPLASQRSRDHFDGDPREPAPPAYSPADFYPPPASPHICETPLSTRVAPSAPSASLFTAGGIGLP
      SSRRRNDSRDDSTVR 31.516 (108)
      SSRRRNDSRDDSTVR 16.802 (108)
                   VRNVSKTSPLASQRS 14.628 (121)
      SSRRRNDSRDDSTVR 12.372 (108)
      SSRRRNDSRDDSTVR  6.556 (108)


167/2881) score = 262.517 29.487 (total and max score)
>gi|22960703|ref|NP_690892.1| VP2 [Colorado tick fever virus]
    1 MSARTKEKTKDKTKNDEQTVSTEASAADRNDREKSSSSEPEDNAKETLTKKDSSSKKSVDVLAAMIEQKVQMSGSAGLGEFFGRMRPEITDAFFAALERE
                                 DRNDREKSSSSEPED 29.487 (35)
                                  RNDREKSSSSEPEDN 27.999 (36)
                                   NDREKSSSSEPEDNA 21.599 (37)
                                 DRNDREKSSSSEPED 17.633 (35)
                                    DREKSSSSEPEDNAK 15.245 (38)
                                 DRNDREKSSSSEPED 14.587 (35)
                                    DREKSSSSEPEDNAK 13.153 (38)
           KEKTKDKTKNDEQTV 12.993 (13)
                                   NDREKSSSSEPEDNA 12.759 (37)
                                    DREKSSSSEPEDNAK  3.466 (38)
  101 ADVSKVVPSSLSKLDDGQVVDLLSVGEERTLSQSLFQLEVVTSIPHFYQLTAKQIGALGAQGGYLKAYHGEQVYPFIDPVANQFGRGFDLAYVRINTSGQ
                              VGEERTLSQSLFQLE 25.785 (132)
  201 GVELFIDPFDFDKVSCKVGGESLTGIGLSNAVGVDEITYDDVKTPEQMMEFVVLLIAGAAKMGRFCSSGVDARRRRKLFKTWVRRPVSDNFRHVQGWLLE
                                     VGVDEITYDDVKTPE 21.288 (239)                                    GWLLEDDYENYPHVP  9.530 (303)
                                     VGVDEITYDDVKTPE  6.977 (239)                                    GWLLEDDYENYPHVP  1.191 (303)
  301 DDYENYPHVPEALTVFSEYQWFAREVADNMTDNGLGTSVQMEDGPNIESFFNRKYREAAICNLDFITAEAHANVMEELQNEKMNVSAYVDLLQSCQMGIF
      
  401 DIEGDTDTIKLKVYMREVEDYEAELTRMMLFPGDQLYVDCLRTAALVSPNIRQFILSVLIQQATSRVGLIELLPVAEMTASLTSRDNISVSHNMALTLAI
      
  501 GEWKELLRLTNPQQICQKIVCDIMAPFVDGLRMEDSLGVPTPSKLVFSLLGAKVALILTPNLYDYNLHLKAHLVTMILSCFFPDQYGALIASRGYGHDVT
                                       EDSLGVPTPSKLVFS  4.296 (541)
  601 GNRIDSIRDGERTKKNCRFATYTVLDPIPNGPPDRTRRKWLLMKRVQEWLLRNDLVRRREIRDIIYRPYANVLRLPGQTYLPRRQAAGAPLPCEVLLNDA
      
  701 IAILEEYRTVFHHPNDRNQGPQDRHALTTLSNLLRWYTRGFAEWFHWVYRPLYLQIALHPIIFWSHRLGQGVWRQFPAVREDRERRFDNHLEGVPFDSPV
      
  801 IAAFEPDVALNPFTLRQGADLLGRVHAQGSTFRGGAYDSASVILLSEYEALYRMTDSEGMVDEYIKTLMASRQLLEGLRLVAELSTGELLRDTPILDYIR
      
  901 TAFCEGRFPSHIFFKILNLFGVKINHGVLAQVGERSIEHRLRGDYRVYYPRPGFLDPALEFIPDRIVVVDPVRPSVRRNVKLIMDAVFDPEFGMIKMRKG
      
 1001 VTFSLRPTNDLTFSSFHEIPPIQVEMTGNVNYVYDSETARTRAEYDVQVRWEAPGRIITMNLLVTSSYEILSSMEDILGREVRAFSFVVQDVSKFSGIYY
                              EMTGNVNYVYDSETA  8.793 (1032)                         GREVRAFSFVVQDVS 15.735 (1086)
 1101 DFMLSAVRKEHAIVWFPNLRGILHHHAISIEKVETCFKAAELAQFSSFLSLRPTALIKLNVVQTTNIRGGILPPSVSKPILPCEGVHPSFIFALMSMWRR
      
 1201 IGFAGLPSR
      


585/2881) score = 168.188 21.304 (total and max score)
>gi|22960701|ref|NP_690891.1| putative RNA-dependent RNA polymerase VP1 [Colorado tick fever virus]
    1 MARRPSKEWRERFNALSLKCKQLIHSSITNDFTTTDKAQQSTFYSSSGLMDVRKRLSISESLEVFGSLIDNWDLVQLVGTRAEPFVLNNPASYLLVNQLL
                                                         VRKRLSISESLEVFG 15.826 (59)
                                                       MDVRKRLSISESLEV 14.641 (57)
                                                       MDVRKRLSISESLEV 13.163 (57)
                                                       MDVRKRLSISESLEV  7.573 (57)
                                                       MDVRKRLSISESLEV  2.349 (57)
  101 ALAGQAHSAASMVFLNSLMYDDALDHVNLWPYEVERPIPQITREVLSPPPFSVNSYYLQRDIDVIKAKTKAAVYIENYRAGDVFAKKRSISKGATFEERV
                                             QITREVLSPPPFSVN 14.087 (147)
  201 YHGAVTMLQRMVKLRGSTIQECFVIAISSYRCSDCVRRMMASESGTGAIHEMDHICIMRSNALRWLQAAFSDFPEFPFLMTRDGVKFASNCGAVSTQVPL
      
  301 LFFQTLEMMVLTMDGTLSSTWEGWVCCEWYDRARVGLFSEMFDRRGVVAHLREAILRQSRLLRYQSRGLHLASVSNFPKRSVSADGLDDRIIEGLQKFNS
                                                                                 NFPKRSVSADGLDDR 21.304 (383)
                                                                                 NFPKRSVSADGLDDR  4.754 (383)
  401 KVCSFIQSWIFQIDLVDEPARWLAVMIKTFASALLYVMGATSLSLEQSAQGTLGIGDPISFPRQEILLEGEWIAVDWYYPDPDLADMREMGMALVDNASP
                                                                                                     DNASPEYTDWEYGFF  3.024 (503)
  501 EYTDWEYGFFNVQTTNSAGNVKEVIEERRKQLVAEFGDQGKLLAKVENTRILDAVQKITSTFQNPQDFCDSADNVRKAGERHQVGRRPRVIQMVGTEGQL
      
  601 SAFVLHNVLRPAYKATRFTTSGKNSGDIRDMNIVLEISGELGYKSSLDVKGMDSSTKPFQTNLSLSCVFHRLRGEVLGYPAFFLGSTSSSKDNYVVTRTR
      
  701 YRDEHGGILVEEEYKLTYPQYVLLLGAIHWTSPTRFTDGYFQEFVMTSRTVFRSGLLNTADQHTFLGVIMYALLEKRLRQRWYGKHGKEMREKIGQRREA
      
  801 LEEYEEHVKLLGSVLGDDQVAGAFCQGIVDEEVILRITRDLCDETKFLMERLGYECEPEISEYSAEFLKQKGVLGAPELFPERLLLFSSERGDMAGSLPL
      
  901 DRVKIMLSMTDEKIGRARCPLPYASLMLFTSWVSGTASFSIGEEGRLLYRTGRNWKKVFASKRAASVAWKDQFTSDGVFDVRWNGFGMFYKEWASANTKT
                                      VSGTASFSIGEEGRL  2.810 (940)
 1001 ILLGCGLLWACSDALGVPFPPLVQKDEILCPGTSVYTIPSNAMTHYLLWATRRDRADAERMWRAVRDDLLRGDNDPLESYIEYVDKMFAEVGVIDIPFSA
                                  LCPGTSVYTIPSNAM 10.828 (1036)
 1101 LHIYGVGMGFVAGVMPVPMEVWYDFGLFGKVGGFGTWIAELVFKDIRIDREKYDLPRLSMWKNAANHSLPSEVRRASLYARDTLHEKYGMVVPSAVLVAE
                                                   IRIDREKYDLPRLSM 10.534 (1153)
                                                   IRIDREKYDLPRLSM -1.240 (1153)
 1201 RPGCKIDQALFEVRRVGMEDVRELEKVLDELTRLNHLERKFTKRLAMGLFIVEKLTERRTGYGPAIASNGWGHIAAPYSFQARLLECLAFPMYNGFNYEA
      
 1301 VRERVFVDGKLPGDPKLYLKIGRQALSYSEEAYNLVSASMGLSSRQAADMRDMILEGINGLEEARFALNPRKTFLFDVSRRKGAGFFQTPHRRKTNQAYC
                         KIGRQALSYSEEAYN 13.046 (1327)                                 KGAGFFQTPHRRKTN 19.174 (1389)
                               LSYSEEAYNLVSASM 12.005 (1333)
 1401 EMMGMALLLMEPWKFSSGDWRMSFSHRLRAILGRR
                     SSGDWRMSFSHRLRA  4.312 (1423)


1354/2881) score = 62.031 15.575 (total and max score)
>gi|22960711|ref|NP_690896.1| VP6 [Colorado tick fever virus]
    1 MAASGWNAVIPKTSSYDYITVSIQPAQQDNKKNLVIEFPPVSYFYGVYWTTDDMIIVRLPASTTSSQDLSKMVTITKLRWTFQNQKFTCSVGSDLAFRII
      
  101 MTCNVGTMYFTATFLLNTLTSTGTKVYGMFNYVSLSSLVVVVTGNDAAHVEALIAVEGAAVRNQVAKLILWSVTETTNYLSFEKLISKAGKDVESGYYKG
                                                                                                KDVESGYYKGDTKTK 15.575 (198)
                                                                                               GKDVESGYYKGDTKT  7.401 (197)
  201 DTKTKRAIQALSISQGESWYYTELCTSSPLDVGGSGLAFFMRIRGVGLRSEAGVTPWKVSEIFKPLTSRLESDFSYSIHPEAQEDDSVVVHKAHLLAQNI
            AIQALSISQGESWYY 12.808 (214)                                  RLESDFSYSIHPEAQ 12.356 (276)
            AIQALSISQGESWYY  2.548 (214)                                 SRLESDFSYSIHPEA  3.775 (275)
  301 IRDLGYKTVAELDTAEDSHLPVGSADCLAALLDLLYRRSEEMTLALNREYKPRRRRAAIAPQIQDPAVPAIQTYQNLVAGMLGELNKSQQEVLAFKGKFE
      
  401 QLERKVNNHLAVNPLTKLSRIKQRMDQFETSLAGVSSVVNEVQGLRNSHGQLSTEINRIKEAEGHFLNDLESVRRHLQGETGHLRSQLGNSLVTIFKPII
      
  501 KMISRDIGMCLKVGSADQSQNDVVALSSRIDRLTQEVVALQNSEKPRLFYLHDKSEIKAAAGALEAVAAHVYLGWMSQRFICPPVLGTVYHHDRYIQGVY
      
  601 YKLVACTIEMVHLDKGTMILLIRDEILPVGVLHEVESNIVLDQCDHVPGIVRLSRDRVSPVDYIEVYEVVDPGVFTLSFSHVIAIYIPRCSGLRLLP
                                                             DRVSPVDYIEVYEVV  7.569 (663)


1804/2881) score = 20.602 13.414 (total and max score)
>gi|22960707|ref|NP_690894.1| VP4 [Colorado tick fever virus]
    1 MGNRVSTYSPQFITINGNNNALDTKTMERFDQTNSVDAAVKLPDGINPTRAEFSTVNDMRAFLGLRDDLLCEDDDIFEDMFDQMVGSEGKIKGVVSGTLD
                                                                                                    VSGTLDGYEKIRKAA  7.188 (102)
  101 GYEKIRKAANWLGGTYSRPWRVETREMSEIQKRIDTALPAMTSIIGGTFGPGAARVGGDHMLVRPEQWVNVRGDFFLGHDDGFESRHIAVGTDAFQCVRL
      
  201 GRLMPEFGDAVRGGGWANGVSYLMGQPLFQIAYGRVVNDVDRPIQILWQAALRTAASSEGDVPVAEALKILGAMTKSTFSWMVSIVGTEYSMEATAERPM
      
  301 FPMTHLTSADYELLHRLFVMWLKGDVMHSRFFDVVANLESFTSGMCFLNRVRLALQLFVTKLDEETKSRQDYWCDMLNQLMEVHSCPLLYTAFLLSGGWN
      
  401 DEVSMKVEPIDGVVLERLEFSGRYLWMSWRNAATYSEYVRMHAEGGDGDDDILGLLKRGAAQMKGMVAGHLRPVLNEAAGAAERVMTGWAKQKAGTLKQA
      
  501 VTNAMAGVLLDTKREAQAEANVYGSMVGGRHVLALPPTDHLQKLAPLVPPGAADTVIDDVKRVGHHVGLAIMERGEPVREPVVENHVVHEMVNRTKTGVG
      
  601 QIGEVRRELAKCSEVMKDVSVEKMVARPDEVRGTSFPIHTRGYHVSLVDGCDKHAMKDPTNNLAAGATFSCQGLVTGKLKTCFSVTLAKAHHNRETSPTT
      
  701 LHVISGGFFSYDPAAVHIGGQDGGGPDHDMNINVVVTAAVKKSTSETACKVYVGAIAKSPNTTHHTTNNGVGFVPAIDDKGQTYFTTSGVFVGRLSFNIS
      
  801 ALLRGGLTGVTSCPWDGTFAFVVACGCSNYGSSGCTHVELVQLGVEFGECIIVPRGLDRYYIFNRVRYYDKTIFDFIGRVDATVAVSESPLDVVSAWSEL
      
  901 ISPLVVYLPLMVHELKSANTLALVKTRYRAWLKKVGLKMGENNPFRTDEDCDGWVCAAILAMPMWMRYAGGNPLIIMTQDDRKASAIMLLSTAKAMLPLS
                                             GENNPFRTDEDCDGW 13.414 (947)
 1001 AFQLVDGSLSRAAAKGLKWAADREIMG
      


2065/2881) score = 26.807 11.821 (total and max score)
>gi|22960699|ref|NP_690889.1| VP9' [Colorado tick fever virus]
    1 MFGYLQLINPTTDIYIKDYGNFSGIVAHQAYDPVRRDHMLLRSMKLHFGPNSKLLWLGDFHAITLSHANMIFGASSVGFKGVNVSTLPPDTLTTGIRPRP
      
  101 VVTMDFAQLKGFYSDLAQKEDYIMYFHDMVKFVSQTGGAPVSLRDVFLWISESVTGPVVIRTDCVTGCNNLWPSGSGHFYFPYERKTKFRYGTFVECGKN
      
  201 LTWSEGPQWDVKSYVVGFNFVTRANSLLGGGFDEVCYRLMMQAEVPRQVAEQGLTLEQAVRKLASEHHMSRPQLTSRRVPGITDQTKYEAYVVCGPFRTG
      
  301 QVVADSLQMAEDLAWREMLGTLKTLIHDEARQTKGCCXRCWPGELYLINIESAGFREGASAAAAYQAGFLRAFYGCLNTSVCSFSSLDDGLRWLCTRLST
      
  401 KSIGAKGRTVVLFGCHSEGEVLADGFGKTYSAAEAREQVALSGKIGGSAQVIVVWQRCRESKLQRLLPELAMVSYVPEEVVAGFKRVRELETYPQWCLWL
      
  501 YRSMIESMGGIDVGVRDASPLTESGVVYQVEAAQYGMRTTRVRRADGTLDYQGLSWTSLLMLLLGHYGADQTYEALRVSSMFIRAREVGWRKRGTFSCIV
                 DVGVRDASPLTESGV  3.925 (519)                          HYGADQTYEALRVSS 11.821 (573)
                                                 RADGTLDYQGLSWTS 11.061 (551)
  601 ST
      


2247/2881) score = 27.957  9.722 (total and max score)
>gi|22960709|ref|NP_690895.1| VP5 [Colorado tick fever virus]
    1 MFTNKAILAVYQLPEECTLELVVRDGTGNLVNSCYVETFQHRGNIKFGDRQAQVISHFNQVIDLLRTSVSDSIDSMIRYVGEQGNDDTRALVVRAMNDFF
                                                                  VIDLLRTSVSDSIDS  6.469 (68)
  101 PAKVGEAVFQAVQAALQGPGMLTTLMTRQLEFLGNTTLYNTRMLEAILHIVDTKRAPAQDVAPVDYINGPAKTPLWEPYVVQCPDLAPTGRVDVPDMHVT
                                                                QDVAPVDYINGPAKT  8.800 (166)
  201 HNGQPLTTAWYPPPASLRPLLPDGTVGANPEPSAAGANFEPPSASSRNPDDGGSTPVDTVELRSATDVPENDHALRLLEEIARSHLPSHQQTHNMIVPQK
                                                     NPDDGGSTPVDTVEL  2.966 (255)
  301 DGAQGVVVTPDYAKSGCKVDMQPFHSYGGPNESHFAPMGIMLNYDKYDCGFVIPLEDPRHTDCNLWTEMPTMRDDFARQGRFWRYDLNVDHFRECIARHT
      
  401 HVYADGARLMGTFVFELVKGERWTLEICSYRDRQFRSALLARATPRLMHALGYGTNFGRFIIAMDPRMNLSDFPVDVMRPAEGRRPCVCQESRGAGPLMD
      
  501 ELDFYFEKNWNELERRAQEGGEPKTLTRPTELIEALTALGKGTAFSLTPQKGSCVPTTMARMLRDRGADEWAVILEKMATSLALAAAKEGNPAEAFYRDM
      
  601 SSWTNDERSRAMQLITWKRLAINFGVKVSMRALGVRNGYRVSRAAIPKGVMALNNCELFGGGHVCPECHSVFQSAGERKMCTTLDLMFHQLFLLSTGDVW
      
  701 LGALVIHDPRSHVSKTMKGVNRGANGGVKYEEIRKVRQFMVKFPFGRTCPH
                            GANGGVKYEEIRKVR  9.722 (730)


2269/2881) score =  9.525  9.525 (total and max score)
>gi|22960715|ref|NP_690898.1| VP8 [Colorado tick fever virus]
    1 MRADRQSTAKLRPSLHAVIQTGNLNAFNFTVEGVDCPTPADLSRYCVANGWFFKIGNQVIIPVLRNFPAFNYNTDIGRFTSFPFETLEDVTKLHDLANGD
      
  101 LVPHFAFVEDGSPVVAAICDRHDNVVTLRFRDSGGRIITVEELLAGEQRDLNLYQGLDQLADEAGIRPEDIDQAALAAQAVADAGGGVAQQQAAAAAAGV
                                                    EQRDLNLYQGLDQLA  9.525 (154)
  201 QAQEDLPVGREDELRPEDVADARGQAAAPPQAQAPAPPDAALQRQREQAILRQVPNLHVLPQPRQQLIDRLAQVREAEQKFINEMIQEVGVIEQQRDVAA
      
  301 AGMRLELCRSVHRVDGILRAYQERVNPFRLGLNYRPPILLEEEIRVEENARRLGGEIGLHDFEIAERPERALLHAEYLGNLMHVEQEKLLTTGRTFVAHI
      
  401 HQAGYCNPEGWCCLQDVEVQVQGIEPESLLPALAVRTNCRGLVLRAPLPIIRVLTQIIHHPSGLDRLEATLNVLLTDMRERVSTLTTADSTRRIRVNDAH
      
  501 DLAAMTAPLGHVYAMLSRWRDNVARLRASAQHQLIAQELARKYAEWRPGQHYTIPGRVLNLFANRQLRYQSQLEWVYPHLWIADRNLAGAWILNGVVPTY
      
  601 RNLGEWVPDIAFIGLVQFLEFWEEFVTWFPHYGVGPINRGVPVFPTVFSPRMSSLAVRLL
      


2610/2881) score =  8.051  6.939 (total and max score)
>gi|22960705|ref|NP_690893.1| VP3 [Colorado tick fever virus]
    1 MAQLLFRKTTQDFRDCFGLKHEILASIYNEKSTFSSENGSIQILEEAEVNALGELVRDGTVAISFGPGIYSRMFSHLRDDSDYRSALTDCVAHGWKQTRD
      
  101 ARDVREWQRSAAIMCAERYMYKVRQAYKRVVENLDHMYAWHYLTEGPSEHVFILPAMYESVRHETTSEAYGMQCGGIIGGNVSLMLPRDEQYTTLFKAWL
      
  201 MSLAKMSLSELREPHWNGVRVQLSRDHRILYYGDLLPSDGDITYLVNKLEYHTIWFPEGDFETMMGAMLRDSFPAGCHAHLNIPVPHYFVFDTDDDLILR
      
  301 CWKGVRDTWIKLRLGYEEGGVNDSRMSEALIVNRDLPADLSESLFCCCLARGVSRDQVRTLKDVRNVAQAQIRHVVSGQGVWWEHMVRGQPLACSIRPGK
      
  401 VVLVVDYEDGPLHVSIRVRLLNVHYARELGMKASDVVVRIPTSNRPRWVETKEYERSLRFYEFRPGPITTEFHHVFAFYCYWGCGRVEKRRHLYQIREVR
      
  501 RGNLYSRSRFLRRIAEDGEKVKVQGRTHVTATRAVQHEKCNPNEDIIYSREFARELALTGKIKEAGALAVIYTCMQTLGVDIDPPAGWVREGRPKQRTAK
      
  601 LCHLLTRILTAFFSYRGGSSSLVCSVMVVIFSIILYYLRLKHVDQEVRYDELTLIWYGDGGVELQRILREVSMTRFVAVAGDPATPEYIAQAKLWANKKS
      
  701 NIVVFNYARPYERGPVFENLIRDTVSLREAAEVFILRTDDSWSQYGNTVVAMLGEGDFCDLVHFGASCDPMEHYFVHISQPPGTNPGYEPANQEEPFEEW
                                                                                      PPGTNPGYEPANQEE  1.112 (788)
  801 LYETQAMERVIPTTWESEIVDARGMLVSILTFHFRFAGWFELDVPGDDIGRGLQLMGSINKVVHVSCFVQNGRRYFRLSVDLDVDRVLRNMRHEGDALMA
      
  901 AELFVTDAVLVCEGLVVGEMHRLQRTYRSVNAMVYHQGMTNFIVYEWMRRVLLTNLLDEMLVFDIGGRNGELSGWVVQDVKVHYFCVDPAGEEAIPKGQR
                                                                                  VQDVKVHYFCVDPAG  6.939 (984)
 1001 VRLPGGRAIWDIAETVEQNVARYLEVVGKPQTPAEGIILIFSNSIVAAYEAAGRNNRNQVANLYQQLQAWGGRVFIRDQLVPTRANPGDYWIQAAFPGNV
      
 1101 YPPGLCEDFNIDPDAGILPLRYPDTGQGATDVVLANGRLGHLTSSWFQSLYCGAARGFILNGFGRLIWPIYCRHVVVLATRP
      


2770/2881) score =  3.615  3.615 (total and max score)
>gi|22960721|ref|NP_690901.1| VP11 [Colorado tick fever virus]
    1 MPALAIIGDTLLNASLIDKYTPPSSNAQNQGFTTYVHSVKPLIPQIIGIPEDALKQWTLFTDWAKLNDIDLNADETFKEILTIGKRLVSGDITQFVYRQF
                   ASLIDKYTPPSSNAQ  3.615 (21)
  101 RGKLEVGYFGKTDNVREKPSFFPLLGAGQIESLKDLLSRHFEVWVYFAPKPVIDWMIRHEIDLATVEFDVRNMLKMLSNNPIKWETLLEKIANVAESRIT
      
  201 ADRDEVGEWRPWVIGLLMIFGQSLKIGGLMAVLKWRQLGPVCYRNLSRV