v1.1 03.04.09 Phosphorylation prediction results for Western equine encephalomyelitis virus

                                                                                                                  Total     Max
   Rank                                                                                                           Score     Score
 466/2881) gi|21238455|ref|NP_640330.1| nonstructural polyprotein [Western equine encephalomyelitis virus]       267.411   22.871
 834/2881) gi|21238456|ref|NP_640331.1| structural polyprotein [Western equine encephalomyelitis virus]           87.701   18.953


466/2881) score = 267.411 22.871 (total and max score)
>gi|21238455|ref|NP_640330.1| nonstructural polyprotein [Western equine encephalomyelitis virus]
    1 MERIHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVILDIGSAPVRHAHSNHRYHCICPMISAEDPDRLQRYAERL
                                                   VATKLIESEVDRDQV  5.994 (53)
  101 KKSDITDKNIASKAADLLEVMSTPDAETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGFDTTPFMYKNMAGSYPTYNTNWADE
      
  201 RVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNKIIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYGKVEN
                                                                                         VIKKITISPGLYGKV  3.734 (291)
  301 LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQKLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADL
      
  401 DDEKELGVRERTLTMGCCWAFKTQKITSIYKKPGTQTIKKVPAVFDSFVIPRLTSHGLDMGFRRRLKLLLEPTVKPAPAITMADVEHLRGLQQEAEEVAA
                            TQKITSIYKKPGTQT  7.828 (430)
  501 AEEIREALPPLLPEIEKETVEAEVDLIMQEAGAGSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKVEPYHG
      
  601 KVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYKTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYE
                                                  ALNTDEEYYKTVKTQ  8.265 (652)                   PPFHEFAYESLKTRP 10.154 (699)
                                                           KTVKTQDTDSEYVFD  3.995 (661)
  701 SLKTRPAAPHKVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGVKHPVNTLYIDEAFACHAGTLLALIA
                KVPTIGVYGVPGSGK 10.603 (718)
                KVPTIGVYGVPGSGK  8.660 (718)
  801 IVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFRGWVKQLQ
      
  901 IDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTA
                                 KVNENPLYSQTSEHV 11.636 (935)
                                 KVNENPLYSQTSEHV  2.734 (935)
 1001 DVFQNKVNVCWAKALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVALTYRDQHWDNSPGKNMYGLNREVAKELS
      
 1101 RRYPCITKAVDTGRVADIRNNTIKDYSPTINVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIRCDLDLGI
      
 1201 PSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG
      
 1301 NHTHDQDRLGVVLDNIYQGSTRYEAGRAPAYRVIRGDISKSADQAIVNAANSKGQPGSGVCGALYRKWPAAFDRQPIAVGTARLVKHEPLIIHAVGPNFS
      
 1401 KMPEPEGDLKLAAAYMSIASIVNAERITKISVPLLSTGIYSGGKDRVMQSLHHLFTAFDTTDADVTIYCLDKQWETRIIEAIHRKESVEILDDDKPVDID
                                      PLLSTGIYSGGKDRV  9.173 (1440)                  EAIHRKESVEILDDD 20.531 (1487)
                                                                  TDADVTIYCLDKQWE  9.130 (1468)
 1501 LVRVHPNSSLAGRPGYSVNEGKLYSYLEGTRFHQTAKDIAEIHAMWPNKSEANEQICLYILGESMSSIRSKCPVEESEASAPPHTLPCLCNYAMTAERVY
      
 1601 RLRSAKKEQFAVCSSFLLPKYRITGVQKLQCSKPVLFSGVVPPAVHPRKYAEIILETPPPPATTTVICEPTVPERIPSPVISRAPSAESLLSLGGVSFSS
                                                                            TVPERIPSPVISRAP 20.309 (1678)
                                                                                    PVISRAPSAESLLSL 19.086 (1686)
                                                                                       SRAPSAESLLSLGGV  6.182 (1689)
                                                                            TVPERIPSPVISRAP  5.841 (1678)
 1701 SATRSSTAWSDYDRRFVVTADVHQANTSTWSIPSAPGLDVQLPSDVTDSHWSIPSASGFEVRTPSVQDLTAECAKPRGLAEIMQDFNTAPFQFLSDYRPV
      
 1801 PAPRRRPIPSPRSTASAPPVPKPRRTKYQQPPGVARAISEAELDEYIRQHSNXRYEAGAYIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLD
        PRRRPIPSPRSTASA 22.871 (1810)
                                     PGVARAISEAELDEY 20.504 (1839)
 1901 LEREKMLQKKLQLCASEGNRSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEVAVKTCNLVIQENYPTVASYCI
                   CASEGNRSRYQSRKV 13.100 (1921)
 2001 TDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQPEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDTF
                                   SYPKKHSYLQPEIRS  7.582 (2037)
 2101 RDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPN
      
 2201 IHTLFDMSAEDFDAIIAEHFHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGTRFKFGAMMKSGMFLTLFVNTL
                               VLETDIASFDKSEDD 14.088 (2233)
                                   DIASFDKSEDDAIAI  4.448 (2237)
 2301 VNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMAERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDDT
      
 2401 QDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIRGSPITLYG
                                                       ESVKNFKSIRGSPIT 20.962 (2457)


834/2881) score = 87.701 18.953 (total and max score)
>gi|21238456|ref|NP_640331.1| structural polyprotein [Western equine encephalomyelitis virus]
    1 MFPYPQLNFPPVYPTNPMAYRDPNPPRRRWRPFRPPLAAQIEDLRRSIVNLTFKQRSPNPPPGPPPKKKKSAPKPKPTQPKKKKQQAKRTKRKPKPGKRQ
                                                                     PPPKKKKSAPKPKPT 18.953 (71)
                                                       NLTFKQRSPNPPPGP 15.835 (57)
  101 RMCMKLESDKTFPIMLNGQVNGYACVVGGRLMKPLHVEGKIDNEQLAAVKLKKASMYDLEYGDVPQNMKSDTLQYTSDKPPGFYNWHHGAVQYENGRFTV
                                                           ASMYDLEYGDVPQNM  7.770 (161)
  201 PRGVGGKGDSGRPILDNRGRVVAIVLGGANEGTRTALSVVTWNQKGVTIRDTPEGSEPWSLVTALCVLSNVTFPCDKPPVCYSLTPERTLDVLEENVDNP
                                                                                                    ENVDNPNYDTLLENV  3.786 (302)
  301 NYDTLLENVLKCPSRRPKRSITDDFTLTSPYLGFCPYCRHSTPCFSPIKIENVWDESDDGSIRIQVSAQFGYNQAGTADVTKFRYMSFDHDHDIKEDSME
                                                                                     VTKFRYMSFDHDHDI  2.427 (387)
  401 KIAISTSGPCRRLGHKGYFLLAQCPPGDSVTVSITSGASENSCTVEKKIRRKFVGREEYLFPPVHGKLVKCHVYDHLKETSAGYITMHRPGPHAYKSYLE
                                                                                                         EEASGEVYIKPPSGK 10.439 (507)
  501 EASGEVYIKPPSGKNVTYECKCGDYSTGIVSTRTKMNGCTKAKQCIAYKSDQTKWVFNSPDLIRHTDHSVQGKLHIPFRLTPTVCPVPLAHTPTVTKWFK
                       YECKCGDYSTGIVST  6.863 (525)                                       CPVPLAHTPTVTKWF 12.792 (592)
  601 GITLHLTAMRPTLLTTRKLGLRADATAEWITGSTSRNFSVGREGLEYVWGNHEPVRVWAQESAPGDPHGWPHEIIIHYYHRHPVYTVIVLCGVALAILVG
      
  701 TASSAACIAKARRDCLTPYALAPNATVPTALAVLCCIRPTNAETFGETLNHLWFNNQPFLWAQLCIPLAALVILFRCFSCCMPFLLVAGVCLGKVDAFEH
      
  801 ATTVPNVPGIPYKALVERAGYAPLNLEITVVSSELTPSTNKEYVTCKFHTVIPSPQVKCCGSLECKASSKADYTCRVFGGVYPFMWGGAQCFCDSENTQL
      
  901 SEAYVEFAPDCTIDHAVALKVHTAALKVGLRIVYGNTTAHLDTFVNGVTPGSSRDLKVIAGPISAAFSPFDHKVVIRKGLVYNYDFPEYGAMKPGAFGDI
                                                                                  RKGLVYNYDFPEYGA  8.021 (984)
                                                                                  RKGLVYNYDFPEYGA -2.754 (984)
 1001 QASSLDATDIVARTDIRLLKPSVKNIHVPYTQAVSGYEMWKNNSGRPLQETAPFGCKIEVEPLRASNCAYGHIPISIDIPDAAFVRSSESPTILEVSCTV
                                                                                      DAAFVRSSESPTILE  3.569 (1088)
 1101 ADCIYSADFGGSLTLQYKADREGHCPVHSHSTTAVLKEATTHVTAVGSITLHFSTSSPQANFIVSLCGKKSTCNAECKPPADHIIGEPHKVDQEFQAAVS
      
 1201 KTSWNWLLALFGGASSLIVVGLIVLVCSSMLINTRR