v1.1 03.04.09 Phosphorylation prediction results for Respiratory syncytial virus

                                                                                                                  Total     Max
   Rank                                                                                                           Score     Score
 209/2881) gi|9629371|ref|NP_044592.1| Phosphoprotein (P) [Respiratory syncytial virus]                           98.148   28.536
 901/2881) gi|9629376|ref|NP_044597.1| matrix (M2/22K) [Respiratory syncytial virus]                              27.083   18.374
 934/2881) gi|9629377|ref|NP_044598.1| Polymerase (L) [Respiratory syncytial virus]                              101.061   18.192
 952/2881) gi|9629370|ref|NP_044591.1| Nucleoprotein (N) [Respiratory syncytial virus]                            32.852   18.113
1475/2881) gi|9629374|ref|NP_044595.1| Attachment glycoprotein (G) [Respiratory syncytial virus]                  32.212   14.951
2302/2881) gi|9629369|ref|NP_044590.1| non-structural protein 2 (1B) [Respiratory syncytial virus]                 9.264    9.264
2333/2881) gi|9629372|ref|NP_044593.1| Matrix protein (M) [Respiratory syncytial virus]                            9.059    9.059
2881/2881) gi|9629375|ref|NP_044596.1| Fusion protein (F) [Respiratory syncytial virus]                           -3.106   -3.106


209/2881) score = 98.148 28.536 (total and max score)
>gi|9629371|ref|NP_044592.1| Phosphoprotein (P) [Respiratory syncytial virus]
    1 MEKFAPEFHGEDANNRATKFLESIKGKFTSPKDPKKKDSIISVNSIDIEVTKESPITSNSTIINPTNETDDTVGNKPNYQRKPLVSFKEDPTPSDNPFSK
                            SIKGKFTSPKDPKKK 28.536 (30)
                                                    DIEVTKESPITSNST 14.631 (54)
                            SIKGKFTSPKDPKKK  5.843 (30)
  101 LYKETIETFDNNEEESSYSYEEINDQTNDNITARLDRIDEKLSEILGMLHTLVVASAGPTSARDGIRDAMVGLREDMIEKIRTEALMTNDRLEAMARLRN
               DNNEEESSYSYEEIN 21.342 (117)
                  EEESSYSYEEINDQT 10.962 (120)
              FDNNEEESSYSYEEI  6.624 (116)
                 NEEESSYSYEEINDQ  5.826 (119)
  201 EESEKMAKDTSDEVSLNPTSEKLNNLLEGNDSDNDLSLDDF
                              NLLEGNDSDNDLSLD  4.384 (232)


901/2881) score = 27.083 18.374 (total and max score)
>gi|9629376|ref|NP_044597.1| matrix (M2/22K) [Respiratory syncytial virus]
    1 MSRRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKSIDTLSEISGAAELDRTEEYALGVVGVLESYIGSINNITKQSACVAMS
      
  101 KLLTELNSDDIKKLRDNEEPNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKTTLDIHKSITINNPKESTVSDINDHAKNNDTT
                    RDNEEPNSPKIRVYN 18.374 (122)
                    RDNEEPNSPKIRVYN  8.708 (122)


934/2881) score = 101.061 18.192 (total and max score)
>gi|9629377|ref|NP_044598.1| Polymerase (L) [Respiratory syncytial virus]
    1 MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHINLKKLNITQSLMSKYHKGEIKIEEPTYFQSLLMTYKSMTSL
      
  101 EQITTTNLLKKIIRRAIEISDVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHLKAVKNHSTKQKDTIKTTLLKKLMCSMQHP
      
  201 PSWLIHWFNLYTKLNNILTQYRSSEVKNHGFILIDNHTLNGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKNISLSRLNVCLITWISNCLNTLNKSLG
      
  301 LRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWIIL
      
  401 LSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLN
      
  501 TYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSESDKSRRVLEYYLRDNKFNECDLYNC
                                                                        EHEKLKFSESDKSRR 12.504 (574)
  601 VVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITD
      
  701 LSKFNQAFRYETSCICSDVLDELHGVQSLFFWLHLAIPHVTIICTYRHAPPYIRDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKG
      
  801 KFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDD
      
  901 FKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRR
          LESIGSLTQELEYRG 12.311 (912)
 1001 TPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHY
      
 1101 TTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRIFPLDCNRDKREILSMENLSIT
      
 1201 ELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYA
        SKYVRERSWSLSNIV 14.812 (1210)                            KPWVGSSTQEKKTMP 18.192 (1267)
          YVRERSWSLSNIVGV 11.560 (1212)
          YVRERSWSLSNIVGV  7.168 (1212)
 1301 SIDNKDEFMEELSIGILGLTYEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVE
      
 1401 QFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFLSNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHW
      
 1501 ILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNTSDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHR
      
 1601 VKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDKIYIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELEN
                                                                                                    NSELENNYNKLYHPT  7.668 (1702)
 1701 NYNKLYHPTPETLENILTNPVKCNDKKTLNDYCIGKNVDSIMLPLLSNKKLIKSPTMIRTNYSKQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQI
                                                    SNKKLIKSPTMIRTN 16.847 (1754)
 1801 PLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLIIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINI
      
 1901 DYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKTYVCLGSKL
      
 2001 KGSEVYLVLTIGPANVFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLIN
      
 2101 HKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE
      


952/2881) score = 32.852 18.113 (total and max score)
>gi|9629370|ref|NP_044591.1| Nucleoprotein (N) [Respiratory syncytial virus]
    1 MALSKVKLNDTLNKDQLLSSSKYTIQRSTGDSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILRDAGYHVKANGVDVTTH
                          SKYTIQRSTGDSIDT 18.113 (28)
                              IQRSTGDSIDTPNYD  7.710 (32)
  101 RQDINGKEMKFEVLTLSSLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGL
      
  201 LPKDIANSFYEVFEKYPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKLGGEAGF
      
  301 YHILNNPKASLLSLTQFPHFSSVVLGNAAGLGIMGEYRGTPRNQDLYDAAKAYAEQLKENGVINYSVLDLTAEELEAIKHQLNPKDNDVEL
                                   GLGIMGEYRGTPRNQ  7.030 (337)


1475/2881) score = 32.212 14.951 (total and max score)
>gi|9629374|ref|NP_044595.1| Attachment glycoprotein (G) [Respiratory syncytial virus]
    1 MSKNKDQRTTKTLEKTWDTLNHLLFISSCLYKLNLKSIAQITLSILAMIISTSLIIAAIIFIASANHKVTLTTAIIQDATSQIKNTTPTYLTQNPQLGIS
      
  101 FSNLSETTSQTTTILASTTPSVKSTLQSTTVKTKNTTTTKIQPSKPTTKQRQNKPPNKPNNDFHFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKKTTT
      
  201 KPTKKPTIKTTKKDLKPQTTKPKEVPTTKPTEKPTINTTKTNIRTTLLTNNTTGNPEHTSQKGTLHSTSSDGNPSPSQVYTTSEYLSQPPSPSNTTNQ
                                                                                     YTTSEYLSQPPSPSN 14.951 (287)
                                                                           SDGNPSPSQVYTTSE 13.419 (277)
                                                                                         EYLSQPPSPSNTTNQ  3.842 (291)


2302/2881) score =  9.264  9.264 (total and max score)
>gi|9629369|ref|NP_044590.1| non-structural protein 2 (1B) [Respiratory syncytial virus]
    1 MDTTHNDTTPQRLMITDMRPLSLETIIISLTRDIITHRFIYLINHECIVRKLDERQATFTFLVNYEMKLLHKVGSTKYKKYTEYNTKYGTFPMPIFINHD
                                                                                  KYKKYTEYNTKYGTF  9.264 (84)
  101 GFLECIGIKPTKHTPIIYKYDLNP
      


2333/2881) score =  9.059  9.059 (total and max score)
>gi|9629372|ref|NP_044593.1| Matrix protein (M) [Respiratory syncytial virus]
    1 METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPNGPSLRVMINSRSAVLAQMPSKFTICANVSLDERS
      
  101 KLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGL
      
  201 LLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPMED
                                  YLEKESIYYVTTNWK  9.059 (236)


2881/2881) score = -3.106 -3.106 (total and max score)
>gi|9629375|ref|NP_044596.1| Fusion protein (F) [Respiratory syncytial virus]
    1 MELPILKTNAITAILAAVTLCFASSQNITEEFYQTTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKSAVTELQLLMQST
      
  101 PATNNRARRELPRFMNYTLNNTKNTNVTLSKKRKRRFLGFLLGVGSAIASGIAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID
      
  201 KQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYV
      
  301 VQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPLAETCKVQSNRVFCDTMNSLTLPSEVNLCNIDIFNPKYDCKIMTSKT
                                                                                         IDIFNPKYDCKIMTS -3.106 (391)
  401 DVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKIN
      
  501 QSLAFIRKSDELLHNVNAGKSTINIMITTIIIVIIVILLSLIAVGLLLYCKARSTPVTLSKDQLSGINNIAFSN
      


Total Runtime: 16 minutes, 19 seconds