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                         v1.1 03.04.09

Phosphorylation prediction results for
Human immunodeficiency virus 2
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                                                                                                                  Total     Max
Rank Score Score
328/2881) gi|9628888|ref|NP_056844.1| env polyprotein [Human immunodeficiency virus 2] 79.030 25.420 329/2881) gi|9628889|ref|NP_056845.1| nef protein [Human immunodeficiency virus 2] 137.223 25.400 414/2881) gi|9628886|ref|NP_056842.1| tat protein [Human immunodeficiency virus 2] 57.088 23.617 634/2881) gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein [Human immunodeficiency virus 2] 110.449 20.826 2361/2881) gi|9628883|ref|NP_056839.1| vif protein [Human immunodeficiency virus 2] 8.844 8.844 2524/2881) gi|9628881|ref|NP_056837.1| gag polyprotein [Human immunodeficiency virus 2] 14.754 7.505 2798/2881) gi|9628884|ref|NP_056840.1| vpx protein [Human immunodeficiency virus 2] 2.887 2.887


328/2881) score = 79.030 25.420 (total and max score) >gi|9628888|ref|NP_056844.1| env polyprotein [Human immunodeficiency virus 2] 1 MEPGRNQLFVVILLTSACLVYCSQYVTVFYGIPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIILNVTEAFDAWNNTVTEQAVEDVWHLFETSIKP 101 CVKLTPLCVAMNCSRVQGNTTTPNPRTSSSTTSRPPTSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGLEQDKKRRYKDTWYLEDVVCDNTTAGTC TTPNPRTSSSTTSRP 3.140 (128) 201 YMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYN 301 LTMRCKRPGNKTVLPITLMSGLVFHSQPINTRPRQAWCRFGGRWREAMQEVKQTLVQHPRYKGINDTGKINFTKPGAGSDPEVAFMWTNCRGEFLYCNMT 401 WFLNWVEDKNQTRRNYCHIKQIINTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVAELYRLELGDYKLIEITPIGFAPTDQRR DQRRYSSTPVRNKRG 25.420 (504) DQRRYSSTPVRNKRG 5.713 (504) PTDQRRYSSTPVRNK 2.880 (502) 501 YSSTPVRNKRGVFVLGFLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQARVTAIEKYLKHQAQLNSWGCAFRQ 601 VCHTTVPWVNDSLSPDWKNMTWQEWEKQVRYLEANISQSLEEAQIQQEKNMYELQKLNSWDILGNWFDLTSWVKYIQYGVHIVVGIIALRIAIYVVQLLS RYLEANISQSLEEAQ 21.933 (637) RYLEANISQSLEEAQ 13.350 (637) 701 RFRKGYRPVFSSPPGYLQQIHIHKDRGQPANEGTEEDVGGDSGYDLWPWPINYVQFLIHLLTRLLIGLYNICRDLLSKNSPTRRLISQSLTAIRDWLRLK RDLLSKNSPTRRLIS 6.594 (780) 801 AAQLQYGCEWIQEAFQAFARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELALL 329/2881) score = 137.223 25.400 (total and max score) >gi|9628889|ref|NP_056845.1| nef protein [Human immunodeficiency virus 2] 1 MGASGSKKLSKHSRGLRERLLRARGDGYGKQRDASGGEYSQFQEESGREQNSPSCEGQQYQQGEYMNSPWRNPATERQKDLYRQQNMDDVDSDDDDLIGV ESGREQNSPSCEGQQ 14.979 (52) QNMDDVDSDDDDLIG 17.818 (92) RDASGGEYSQFQEES 13.172 (39) QNMDDVDSDDDDLIG 13.950 (92) RDASGGEYSQFQEES 10.973 (39) QNMDDVDSDDDDLIG 12.869 (92) LRARGDGYGKQRDAS 7.801 (28) QNMDDVDSDDDDLIG 7.397 (92) 101 PVTPRVPRREMTYKLAIDMSHFIKEKGGLQGMFYSRRRHRILDIYLEKEEGIIPDWQNYTHGPGVRYPMYFGWLWKLVSVELSQEAEEDEANCLVHPAQT KLVSVELSQEAEEDE 25.400 (183) KLVSVELSQEAEEDE 12.862 (183) 201 SRHDDEHGETLVWQFDSMLAYNYKAFTLYPEEFGHKSGLPEKEWKAKLKARGIPYSE 414/2881) score = 57.088 23.617 (total and max score) >gi|9628886|ref|NP_056842.1| tat protein [Human immunodeficiency virus 2] 1 METPLKAPESSLKPYNEPSSCTSERDVTAQELAKQGEELLAQLHRPLEPCTNKCYCKRCSFHCQLCFSKKGLGISYERKGRRRRTPRKTKTPSPSAPDKS PRKTKTPSPSAPDKS 23.617 (93) PRKTKTPSPSAPDKS 14.000 (93) RKGRRRRTPRKTKTP 12.391 (85) PRKTKTPSPSAPDKS 7.081 (93) 101 ISTRTGDSQPTKEQKKTSEATVVTTCGLGQ 634/2881) score = 110.449 20.826 (total and max score) >gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein [Human immunodeficiency virus 2] 1 MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEA 101 KKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAM PSGKRGNYPVQQAGG 7.505 (135) 201 QIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVD 301 RFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHS 401 ARQCRAPRRQGCWKCGKPGHIMANCPERQAGFFRVGPTGKEASQLPRDPSPSGADTNSTSGRSSSGTVGEIYAAREKAEGAEGETIQRGDGGLAAPRAER SQLPRDPSPSGADTN 20.826 (450) 501 DTSQRGDRGLAAPQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGDTPINIFGRN 601 ILTALGMSLNLPVAKIEPIKVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTE PPTNPYNTPTFAIKK 12.323 (669) 701 IQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYTAFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDILI 801 ASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTL 901 TEEVQWTELAEAELEENKIILSQEQEGYYYQEEKELEATIQKSQGHQWTYKIHQEEKILKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFH SQEQEGYYYQEEKEL 12.093 (929) LSQEQEGYYYQEEKE 8.019 (928) 1001 LPVERETWEQWWDNYWQVTWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALADSG 1101 PKVNIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSIIKELTHKFGIPL MIKKEAVYVAWVPAH 13.745 (1142) AQEEHEKYHSIIKEL 7.611 (1185) 1201 LVARQIVNSCAQCQQKGEAIHGQVNAEIGVWQMDYTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPNFTSQEVKMVA 1301 WWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREG QFLQRKNSNFKNFQV 13.098 (1388) 1401 RDQLWKGPGELLWKGEGAVIVKVGTDIKVVPRRKAKIIRDYGGRQELDSSPHLEGAREDGEMACPCQVPEIQNKRPRGGALCSPPQGGMGMVDLQQGNIP GRQELDSSPHLEGAR 15.231 (1450) 1501 TTRKKSSRNTGILEPNTRKRMALLSCSKINLVYRKVLDRCYPRLCRHPNT 2361/2881) score = 8.844 8.844 (total and max score) >gi|9628883|ref|NP_056839.1| vif protein [Human immunodeficiency virus 2] 1 MEEDRNWIVVPTWRVPGRMEKWHALVKYLKYRTKDLEEVRYVPHHKVGWAWWTCSRVIFPLQGKSHLEIQAYWNLTPEKGWLSSHAVRLTWYTEKFWTDV KDLEEVRYVPHHKVG 8.844 (41) 101 TPDCADILIHSTYFSCFTAGEVRRAIRGEKLLSCCNYPQAHKAQVPSLQYLALVVVQQNDRPQRKGTARKQWRRDHWRGLRVAREDHRSLKQGGSEPSAP 201 RAHFPGVAKVLEILA 2524/2881) score = 14.754 7.505 (total and max score) >gi|9628881|ref|NP_056837.1| gag polyprotein [Human immunodeficiency virus 2] 1 MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEA 101 KKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAM PSGKRGNYPVQQAGG 7.505 (135) 201 QIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVD 301 RFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHS 401 ARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLGLGPRGKKPRNFPVTQAPQGLIPTAPPADPAAELLERYMQQGRKQREQRERPYKEVTEDLLHLEQRE REQRERPYKEVTEDL 7.250 (486) 501 TPHREETEDLLHLNSLFGKDQ 2798/2881) score = 2.887 2.887 (total and max score) >gi|9628884|ref|NP_056840.1| vpx protein [Human immunodeficiency virus 2] 1 MTDPRERVPPGNSGEETIGEAFEWLERTIEALNREAVNHLPRELIFQVWQRSWRYWHDEQGMSASYTKYRYLCLMQKAIFTHFKRGCTCWGEDMGREGLE ERVPPGNSGEETIGE 2.887 (13) 101 DQGPPPPPPPGLV