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                         v1.1 03.04.09

Phosphorylation prediction results for
Human immunodeficiency virus 1
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                                                                                                                  Total     Max
Rank Score Score
169/2881) gi|9629366|ref|NP_057855.1| Vpu [Human immunodeficiency virus 1] 29.464 29.464 1405/2881) gi|9629360|ref|NP_057850.1| Pr55(Gag) [Human immunodeficiency virus 1] 36.179 15.303 1406/2881) gi|28872819|ref|NP_057849.4| Gag-Pol [Human immunodeficiency virus 1] 109.728 15.303 1865/2881) gi|9629359|ref|NP_057854.1| Rev [Human immunodeficiency virus 1] 16.391 13.182 2137/2881) gi|9629361|ref|NP_057851.1| Vif [Human immunodeficiency virus 1] 33.399 10.969


169/2881) score = 29.464 29.464 (total and max score) >gi|9629366|ref|NP_057855.1| Vpu [Human immunodeficiency virus 1] 1 MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL LIERAEDSGNESEGE 29.464 (53) 1405/2881) score = 36.179 15.303 (total and max score) >gi|9629360|ref|NP_057850.1| Pr55(Gag) [Human immunodeficiency virus 1] 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 101 LDKIEEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQM VVEEKAFSPEVIPMF 15.303 (165) 201 LKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRF RDYVDRFYKTLRAEQ 9.094 (301) 301 YKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGH 401 TARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ EPIDKELYPLTSLRS 7.191 (484) RSGVETTTPPQKQEP 4.591 (471) 1406/2881) score = 109.728 15.303 (total and max score) >gi|28872819|ref|NP_057849.4| Gag-Pol [Human immunodeficiency virus 1] 1 MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEA 101 LDKIEEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQM VVEEKAFSPEVIPMF 15.303 (165) 201 LKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRF RDYVDRFYKTLRAEQ 9.094 (301) 301 YKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGH 401 TARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQVTLWQRPLVT VWGRDNNSPSEAGAD 15.063 (472) SEQTRANSPTRRELQ 4.387 (457) 501 IKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLK 601 PGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGD KIGPENPYNTPVFAI 7.953 (643) 701 AYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWG 801 LTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP KEPVHGVYYDPSKDL 10.071 (905) 901 VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPE KNLKTGKYARMRGAH 10.724 (941) PEWEFVNTPPLVKLW 2.548 (1006) 1001 WEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQS 1101 ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQ AQDEHEKYHSNWRAM 6.701 (1162) 1201 VDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVES ETGQETAYFLLKLAG 10.390 (1246) GIPYNPQSQGVVESM 4.334 (1294) 1301 MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQD RKGGIGGYSAGERIV 13.161 (1341) 1401 NSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 1865/2881) score = 16.391 13.182 (total and max score) >gi|9629359|ref|NP_057854.1| Rev [Human immunodeficiency virus 1] 1 MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSP MAGRSGDSDEELIRT 13.182 (8) MAGRSGDSDEELIRT 3.209 (8) 101 QILVESPTVLESGTKE 2068/2881) score = 29.589 11.801 (total and max score) >gi|9629363|ref|NP_057856.1| Envelope surface glycoprotein gp160, precursor [Human immunodeficiency virus 1] 1 MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDM KLWVTVYYGVPVWKE 11.801 (40) 101 VEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSV RGKVQKEYAFFYKLD 6.938 (173) 201 ITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPN TQLLLNGSLAEEEVV 3.430 (264) 301 NNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTW 401 STEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTK QKVGKAMYAPPISGQ 7.420 (435) 501 AKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSG 601 KLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFA 701 VLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLL 801 QYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL 2137/2881) score = 33.399 10.969 (total and max score) >gi|9629361|ref|NP_057851.1| Vif [Human immunodeficiency virus 1] 1 MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDP GWFYRHHYESPHPRI 10.025 (44) IEWRKKRYSTQVDPE 6.955 (94) EWRKKRYSTQVDPEL 5.450 (95) 101 ELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH LALAALITPKKIKPP 10.969 (155)